YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46122583, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALKPFLPE AKGVLPYYMI ILSIISIGNS LQAYTTLHFS RRVYNGRFIR NPKLPSKTNN  60
   61 FEPEDQTNKL IPAQNDPKAT DQLTPLAGRL FGTWTLITCI VRCYAAYNLH IGPVYTLAYW 120
  121 TYIVAFSHFA SELFVFKTMT FGLPQYFPFA LASTSLIWMP LVRDHYVQYN

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.58
Transmembrane Helix	14	37	0.82
Cytoplasmic	38	89	0.60
Transmembrane Helix	90	111	0.66
Non-Cytoplasmic	112	115	0.42
Transmembrane Helix	116	136	0.74
Cytoplasmic	137	142	0.37
Transmembrane Helix	143	162	0.82
Non-Cytoplasmic	163	170	0.40