YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46138643, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSISPRLHI RHPSPTTAEF TVTTLRPLPP ALHTVVLISR AVLSIFTLLL LHARLTLHPL  60
   61 LAYAAPSLLK IIPPSYLRAP TSIASVAQDI PLSVLVPASI AVLWLSSRRG YVSESILVMR 120
  121 GLGVQTSESP GSYLAGTATR FIPTEKIQDI LLNEAFLGFE VRYYLIVIVE GEDDVVVVFP 180
  181 GLLPRRKIVE EVWRGVRRCL YEQRGEDKVQ A

Type	Start	End	Confidence
Cytoplasmic	1	35	0.72
Transmembrane Helix	36	56	0.79
Non-Cytoplasmic	57	85	0.71
Transmembrane Helix	86	106	0.74
Cytoplasmic	107	211	0.79