YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42550939, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.88
Transmembrane Helix	59	81	0.86
Non-Cytoplasmic	82	127	0.77
Transmembrane Helix	128	149	0.42
Cytoplasmic	150	160	0.56
Transmembrane Helix	161	183	0.74
Non-Cytoplasmic	184	190	0.37
Transmembrane Helix	191	213	0.83
Cytoplasmic	214	217	0.29
Transmembrane Helix	218	237	0.63
Non-Cytoplasmic	238	241	0.42
Transmembrane Helix	242	274	0.62
Cytoplasmic	275	281	0.51
Transmembrane Helix	282	305	0.89
Non-Cytoplasmic	306	385	0.58
Transmembrane Helix	386	407	0.68
Cytoplasmic	408	413	0.68
Transmembrane Helix	414	434	0.87
Non-Cytoplasmic	435	458	0.69
Transmembrane Helix	459	478	0.79
Cytoplasmic	479	486	0.63
Transmembrane Helix	487	509	0.83
Non-Cytoplasmic	510	521	0.57
Transmembrane Helix	522	542	0.82
Cytoplasmic	543	550	0.70
Transmembrane Helix	551	573	0.92
Non-Cytoplasmic	574	597	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPSPSPHK ARRKTPKKPG NGSGTDVKER TPRAEALVRA PAFPLAAFLW PARTSMSQWE  60
   61 VLPVILMVVG FFRWAAGLWG YSGFHKPPMF GDYEAQRHWM EVTTQLPISQ WYFHDLQWWG 120
  121 LDYPPLTAYH SWVLGKLGSY IDPSWFALFT SRGNQDPDLK IFMRATVIVS EYLIYIPAAI 180
  181 VFVRRYSRLQ GVTNWTAWLA LVAILMQPAT ILIDHVHFQY NTVMLGFVMA SMSSMLAERY 240
  241 KWAAVFFVGA LGFKQMALYY AFSVFSYLLG RCVFPRIDLT RLFGIALVTA VSFAILILPL 300
  301 ILGTFYDKTQ GIDAHGGSKD SPSLPLLPQL VNILDTDAFY WPYVEQMVQL VHRVFPFARG 360
  361 LFEDKVANFW CAANVVIKLR QWPTELLQRV ALGATLASII PPNAILFLRP RKTTLPLAFA 420
  421 ATAWGFFLFS YQVHEKSVLL PLMPMTLLLA GKQGLNKDTR AWVGFANLLG VWTMFPLLKR 480
  481 VDLKIPYAVL SLLWSYLLGL PPTSLSAYFQ EGQAAWVQWG TALLHWAFYL AMGAWHALDA 540
  541 FAAPPADKPD LWVVANVGIG AAGFIICYLW CFFKLLQESD LLPGGSSRSS GKKNKTL