YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42550926, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDPHFSDLI LPQNEQLSMS QLMASLKRTT LTIHNRLTSI QTDAEFVDNV SHSYAPRPLV  60
   61 ANERCGSWYI PPERKGASAY FKSTDGHERA WKFSTRRLNL HLVEIIEKND GIIIVDSTRR 120
  121 GKRMPDALSS TIPIWCTVLN LAIIPSHPSS SKLYLPSHLP ATTHSQISTL IPGFVASLKA 180
  181 LNLNLPTCLT KPLRPFWVTP DSTLPSPEDT ESIFEDFRPV ICCTASRRVV GSEMDEGGYI 240
  241 QGAGDDTEMW AHGLEAPLFW ENVDELLETS EAELPDLISR IVDEQATSKK DEGFQLQIVP 300
  301 HISVCALPLP AMPAECRIAI TQDTTPKDSW LKSKTYMQAG LGKSKLASRN LRTALPEICD 360
  361 FAAKYLASVE EPGEQRIAVA CESGKDLSVG VALAISCYLF GDEGKVRDST KNVSFTKNLI 420
  421 KSRLGLIMTA YPGANPSRAT LQSVNSFLMD WRK

Type	Start	End	Confidence
Cytoplasmic	1	126	0.51
Transmembrane Helix	127	144	0.49
Non-Cytoplasmic	145	453	0.92