YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42550814, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQSMLTRT NLATAPACAL CRQLTVSRGP TRIHSASLHT SPRRDSAWGA AVQVASNVVS  60
   61 NVVKRASKDA MHIDPLRSVA KEMKFLTGNI RKLLGSGHPS LDRAAKYYTQ AEGKHVRPLI 120
  121 VLLMSRATYL CPKTPATVPT VTHRGVDTSL SPAQILADVN PAAHPLSSPE QEIADANSDI 180
  181 LPSQRRLAEI AELIHTASLL HDDVIDHSVS RRGSPSANLE FGNKMAVLAG DFLLGRASVA 240
  241 LARLRNPEVV ELLATVIANL VEGEFMQLKN TERDERNPKW SEETVTYYLQ KTYLKTASLI 300
  301 SKSCRAAALL GNTDAVTVDA AYSYGRNLGL AFQLVDDLLD YTQSGSDLGK PAGADLELGL 360
  361 ATAPLLFAWK QMPELGALVG RKFAQEGDVQ RARELVLQSD GIEQTRALAQ DYVDKAIASI 420
  421 ADFPESEAKD GLIEMAHKSL KRQK

Type	Start	End	Confidence
Signal Peptide	1	27	0.82
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	444	0.99