YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46116304, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWELSQRRF IRSINSKYIY GRIPLLHTIV FLIEMAFIAR LTARFNSYYD ERPLMTMMVT  60
   61 NAILGGVADT VAQSITAIRE RAIRQPGGLK KNDGVAIEIH ELDRKNPFYE RDLIPDSVGL 120
  121 PPPFDFERLT RFMAYGFCMA PVQFKWFRFL ERIFPVTKTS AFVPAMKRVA FDQLIFAPFG 180
  181 LAVFYTTMTI AEGGGRRAVS NKLRDMYIPT LKANYVVWPA VQIVNFRLMP VQFQLPFVST 240
  241 IGIAWTAYLS LTNSASE

Type	Start	End	Confidence
Cytoplasmic	1	17	0.98
Transmembrane Helix	18	39	0.92
Non-Cytoplasmic	40	56	0.81
Transmembrane Helix	57	77	0.72
Cytoplasmic	78	168	0.73
Transmembrane Helix	169	191	0.75
Non-Cytoplasmic	192	230	0.60
Transmembrane Helix	231	252	0.77
Cytoplasmic	253	257	0.62