YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46105420, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDFSATLSG KPKLQLLWPE HVNLPFLNTA PQRYRIGRRR TKSKSRPGNE ELTSLKTSFN  60
   61 AWDGVRDLQK HHWRTSDLQY AVVGLLVLFS FWIAPPAPGV KLLAIMGSVW VLLMPATRQF 120
  121 FLPSVTIWTW LLYFFCSRFI PNEYRPHIWV RVLPALENVL YGANLSSILS AHQHSVLDIL 180
  181 AWIPYGLCHF GAPVVCALLM FVFAPPGTTP VWGRTFGWMS ILGVTIQLLF PCAPPWYEME 240
  241 HGLEPAAYGM PGSPAGLARI DEIFGIDLYT TNFSTAPVPF GAFPSLHAAN AVLEALFMSH 300
  301 CFPQFRTYFI MYAGWVCWAT MYLSHHYAID LVVGGLIASC FFYAAKARWL PRRQEGKITR 360
  361 WEYEYVEYGD QTTITDEEYG EYFGMGLLGR PRADSSDGWT VASSSSSCGS SSGTLSPTLS 420
  421 EEALPGMLDD DQLWNTHSPA RDVELSEVVV AAR

Type	Start	End	Confidence
Cytoplasmic	1	77	0.97
Transmembrane Helix	78	98	0.88
Non-Cytoplasmic	99	115	0.80
Transmembrane Helix	116	137	0.84
Cytoplasmic	138	147	0.83
Transmembrane Helix	148	171	0.75
Non-Cytoplasmic	172	180	0.74
Transmembrane Helix	181	204	0.89
Cytoplasmic	205	214	0.71
Transmembrane Helix	215	233	0.92
Non-Cytoplasmic	234	274	0.83
Transmembrane Helix	275	297	0.70
Cytoplasmic	298	304	0.66
Transmembrane Helix	305	322	0.80
Non-Cytoplasmic	323	327	0.57
Transmembrane Helix	328	350	0.84
Cytoplasmic	351	453	0.96