YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42544521, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRINIPPV TRILLIALLG QSILSAAIRY RQWTADANIV IPYLTLVPQL SIIYPWTFIT  60
   61 STFVESNVFT LGIAAVTLFH GGRYLERAWS SAELAKFLAV VSLVPNFLTL CVMVLCFTLS 120
  121 RNESWTLTVI AGTIPVQIAF LVAFSQLVPA HTVTLFRGVI SLRVPRFPLL YIGLVFLLSL 180
  181 TPILNRAALW LAIFGFLTSW TYLRFYKTVF PDLDSSQDAS LRGDASETFA FAEFFPGPVK 240
  241 PFVAAVADQI FLVLVAMRLC TPFAQAEASR NDTRIQRNAP GGARAEAERR RAIALRALDQ 300
  301 RLHAATSNPV AQKSSQPPSR PTGPTVQSQP QPATQTAMAS QPGPLLGETK FEPDHDDAKS 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	9	0.66
Transmembrane Helix	10	30	0.78
Non-Cytoplasmic	31	55	0.65
Transmembrane Helix	56	82	0.78
Cytoplasmic	83	96	0.81
Transmembrane Helix	97	119	0.93
Non-Cytoplasmic	120	126	0.80
Transmembrane Helix	127	150	0.80
Cytoplasmic	151	168	0.70
Transmembrane Helix	169	193	0.86
Non-Cytoplasmic	194	240	0.79
Transmembrane Helix	241	261	0.64
Cytoplasmic	262	360	0.84