YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46108674, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDLEHHLT FYGAYHHNPV NVAIHMVCVP LILISGFSLA TYSGTLIPTP SWLNFPYLEL  60
   61 NLGVIAASVY SLLYLLLEPF AGFLLAIVCM AGAASANYLR QQNPDSTFQG ALAVHIVCWI 120
  121 FQFIGHGKYE GRAPALLDNL VQAIFLAPMF VWLEILFKLG YRPELRARVN KKVQIEVEKF 180
  181 RAKNGKAQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.54
Transmembrane Helix	21	44	0.89
Cytoplasmic	45	52	0.48
Transmembrane Helix	53	74	0.61
Non-Cytoplasmic	75	79	0.54
Transmembrane Helix	80	99	0.89
Cytoplasmic	100	106	0.83
Transmembrane Helix	107	126	0.91
Non-Cytoplasmic	127	139	0.79
Transmembrane Helix	140	161	0.86
Cytoplasmic	162	188	0.94