YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42544365, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGDTCPQPT EPTLSFTQGL IVGQLSVVLV LAAFIKFFIF GDPPSPDVTA SLRATERRSR  60
   61 TLAHKRSLLS LRSPGNRQDR ELNRKKSTVL RNPPALTIGS ILSKTYYNVD SHQPESLDWF 120
  121 NVLIGQTIAQ FRSDAQHDDA ILDSLSKALN GGSRPDFIDE IRVTELSLGE DFPILSNCRI 180
  181 IPVDEDGVSL GHGKKFDPDK AARDGTRLQA RMDVDLSDML TLAVETKLLL NYPKKLSAVL 240
  241 PVALAVSVVR FSGTLSISFI PSNPSQSTPT RMIFNFLDDY RLDFSIRSLL GSRSRLQDVP 300
  301 KIAQLIESRL HRWFDERAVE PRFQEIALPS LWPRKKNTRG PDDGLAEGSV PIGRSKGRDA 360
  361 SRDPQEEARG DAEIRDRGTI RQRRGTRGSD SDDFSMPGSL PSFQIPTP

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.54
Transmembrane Helix	20	40	0.79
Cytoplasmic	41	236	0.53
Transmembrane Helix	237	257	0.45
Non-Cytoplasmic	258	408	0.92