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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46114634, gi|...
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPVTSTPL SEASTCTNTG ISGSKRILPL SPDVSRESEN RRKASKVSRA CDHCKIKKLK  60
   61 CSGTIPCDGC TKRNVNCQYD SVYRRGRPPT PPTVGRQRHS MSSAASTVRP ANPVEENPEV 120
  121 ITTRSSSQGP SGLETAEIEG QFFDPTSNLT FIHRAWKRLA QQNQQTDSGL LTGSENLQPL 180
  181 MSAGDIPFTT KGDQSLLFVS QPAALELFTY YFDNCVVTYR VLNQQYCRSW FDAVINNWHN 240
  241 GQPLKTDIGH AKAAIVLSIL AIASFRQHRI TEQRSIPGMS LLSQQSEQYF LAASDLTAQE 300
  301 TGLPRLESAQ GRVLQVLYLL QTSRMNQAWY VFGNTVPIVT ALGLHRKSNH YRNGGRQPTD 360
  361 YIISECRKRT FWVLYTLDKY LAVVFGRPRF YHDNDTDQDF PDRVNDEDMT PQGPSLAEPA 420
  421 MDCHVDAVIF HARIAIIIEN VSRQVYSLKK MRSEERLAAA QDFIKQLHEW RQALPPHFGT 480
  481 VRPSSLIPIF SRQSTALKLA YCHAVMHTTR PFLLDHSENC SPALQECVTQ CISAAKLALE 540
  541 IVDSMFCEQS VLFHALWWMP YVTFCALAVV YVWDIQQRNN ESAESDNTLL FGLAEKCQSH 600
  601 LARTISAESA SRRYSIIIEE LRQEARQGPQ HASRTIQMLN CNEESLLSSE HESGTSMDEL 660
  661 GSMFEDQESS SSGLMSIMNP LSQWQPTDWL DLDSSLDDLM IF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle