YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42549933, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLMLSVFV VEVIVNLVNT IGATAINNLL WTLINFLPIS TSKAAGEQRK LQADYLKVRR  60
   61 DLNATSSQDE FARWAKLRRQ HDKLLEQLEK TKKTTEASRS NFDRVLTVVR IVVTRAPQYF 120
  121 LPFWYATEPM FWLPHGWFPY WAEWILSFPR APIGSVSIAS WQLACTGVIA LLSDLIAGTA 180
  181 GLLFGTKEAK EAPITSEKVV AEEKKKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.54
Transmembrane Helix	13	34	0.63
Cytoplasmic	35	119	0.77
Transmembrane Helix	120	138	0.68
Non-Cytoplasmic	139	157	0.70
Transmembrane Helix	158	184	0.75
Cytoplasmic	185	207	0.79