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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46117072, gi|...
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFEQQTVP SAGQHYSGRN RVPNVKEFMD QLDQNKKQRD AEIDQQLNQN NIKGETKDHK  60
   61 QNRAEAIRNQ KDVRMVRDPV TGKDVGIRDA DFDYKEAVEN PQMSVPNENL GKPATIATSS 120
  121 KQSGEEYRYA QDVTAPPDPI QEGATSDVPI RSEKTSVVFY KTPSVSYEPM FAILEQRSNV 180
  181 LCAGIFCSIV FIGKMFGGRL LGLIPLGFCV ASGVFLWTKD LIRQGRDLEW SSEQDRGETA 240
  241 TANLIPESVE WMNTMLGVMW GLINPEMFAG VADTLEDVMA ASVPGVIENV RVADISQGNN 300
  301 PIRILNMRAL PDSHVQDIKD EQHRQNEKNT DPEELAANEQ AGSFYNLEVA IAYHAKPSGG 360
  361 DIASKARNMG MQLVFYLGVK GLFGVPLPIW VELQGLVATA RVRLQLTPDP PFLKTLTFTL 420
  421 MGIPKVQAGC TPMIEKGVNI LNLPLISNFV NWAIGAAASM YVAPKSLSLD LGKMLQGDDI 480
  481 KKETLALGIM FVRIHKATGL SKQDARGSKG GGSDPYITIS WSKFSKPQFC TRVIQDDLNP 540
  541 VFEESAGLLV TADLLKADEQ LSVELWDSDR SSADDVVGKV ELSIQKLIQH PGKMFPQVSK 600
  601 LRGVKAESEM PGELHWEVGF FGKTQFRKAL RTDGRDLSLP KELADKPELQ ENKGAIDNAE 660
  661 EDAVIHTPPD PLWPSGVLSI VVHQIVGLEL ANIKGSNGKR KGREYEPARP EAGEVKEEQA 720
  721 KTLPSSYCTI LLNDDLIYKT RTKVVSSQPI FNAGTEKFIR DWRSAIVTVG VRDSRNRQHD 780
  781 PLIGVVPLKL TDILQTSSES TRWYPLDGGI GFGRIRISLL FRSVELRLPP PQLGWDIGTF 840
  841 EFMTNAITTT GYAPSNHVKL RFRTGGSSAS IGKSSSTREA DGMSFNISGE NNSERIRLPV 900
  901 RHRYSSPIFV EFYPSGKRHA DAYAVLWLLE LVDGEDKDFD IPIWKCNNGL RLSQNYITEE 960
  961 NYKSVPDIDM EQVGRLRFHG RFSPGTDSDH IKFASSNDDR ETIETWEACY AEGVRKQDVE1020
 1021 TEIPPVIQKL HEESLTHGRD VLAQADEKQK AKWLAKDGTD WTGAFGEDPS ALMSVERHSQ1080
 1081 DSEEYDDFNE DDSDPDLGIQ DGDTEPTDPS ENGRPSVDST GTNATSATTD SQASASSNSK1140
 1141 NPIKKIKSYR SDSRDMHRKH RGLMQWRPMR NLQFAKDEAK FAVRKVAKLG ALDGRKPDVE1200
 1201 TEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle