YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42549863, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSRVSMAA RSAVFGQARR GLATAAAVTS ATRSHKIVVI GGGSAGLAIS HQLLRTGKFA  60
   61 NDDIAIVDPA QHHHYQPGWT LVGAGLKTKE ELKMNMPELI DPKLKFYNVS VNGLTPEDNS 120
  121 ITLGTGDKVN YEHLVVAPGI KINYDSIKGL PEALAEKDGS VSSIYGYDFC DKVFPNIQRL 180
  181 QKGNAIFTQP AGVIKCAGAP QKTMWLALDH WKQTGLYDPK NPSASPIKIS FATGLPVMFG 240
  241 VPKYSAALEQ MRQERGVEGL FQHDLVEING DKAIFARPDG QEKVTKQFDF MHVVPKMGPH 300
  301 AFVKNSAIAN EAGYVAVNDN TLRHNKFTNV WSAGDASSLP TSKTAAAVTS EAPVLVSNLL 360
  361 RAIDGQEPEP AYDGYTSCPL LTEYGKVMLA EFKYGGVPKE TFGEILGIDQ AVPRRSFYHL 420
  421 KKDFFPWVYK NYMVKGTWGG PKGWLK

Type	Start	End	Confidence
Signal Peptide	1	34	0.89
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	446	0.99