YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42549798, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIMALGPQD FLDYVNYDKQ SLYISAASIA FNPLFWNIVA RQEYHNKLLT KLFGGNSQVA  60
   61 CYALAFTIFS LGMVRDLVFK NAISEQPTHP ALVNDYMRAA AATLFAVGNI LVVSSTWRLG 120
  121 ITGTFLGDYF GFLMDEMVTG FPFNVTGSPM YTGSTCSFLA TSLWYGKPAG VLLTIWVDIV 180
  181 YKLALRYEDP FTSEIYAKRE RERAAGWHGK ATPFNRPGAS QQA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.44
Transmembrane Helix	21	40	0.82
Non-Cytoplasmic	41	51	0.41
Transmembrane Helix	52	79	0.67
Cytoplasmic	80	98	0.47
Transmembrane Helix	99	121	0.85
Non-Cytoplasmic	122	140	0.46
Transmembrane Helix	141	166	0.53
Cytoplasmic	167	223	0.78