YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42549526, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.99
Transmembrane Helix	76	97	0.91
Non-Cytoplasmic	98	113	0.88
Transmembrane Helix	114	134	0.93
Cytoplasmic	135	142	0.80
Transmembrane Helix	143	162	0.95
Non-Cytoplasmic	163	169	0.78
Transmembrane Helix	170	191	0.91
Cytoplasmic	192	202	0.86
Transmembrane Helix	203	225	0.90
Non-Cytoplasmic	226	232	0.82
Transmembrane Helix	233	254	0.92
Cytoplasmic	255	302	0.96
Transmembrane Helix	303	328	0.83
Non-Cytoplasmic	329	338	0.74
Transmembrane Helix	339	359	0.89
Cytoplasmic	360	374	0.96
Transmembrane Helix	375	396	0.93
Non-Cytoplasmic	397	403	0.86
Transmembrane Helix	404	425	0.93
Cytoplasmic	426	435	0.70
Transmembrane Helix	436	458	0.83
Non-Cytoplasmic	459	472	0.72
Transmembrane Helix	473	493	0.93
Cytoplasmic	494	505	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENNSSKDL PMEDIRPGSQ QTLTTSDNES GTVKVQDEEK ATKEQDIVQP HGPNAVGWDG  60
   61 PDDPNNPMNW PAKKKWSCIG ALSLMSLLTP LGSSMFAPGV PDIMREFETS NRNVATFVVS 120
  121 VYVLGFAFGP LVAAPLSEIY GRAIIFNISN VLFLIMTIVT ALSQNMPMLI IFRFLMGFCG 180
  181 SAPITNGSGT ISDIFPVQER GKAMAVWAMG PLLGPCIGPL AGGYMVEAIG WRWVFWLIAI 240
  241 LAGVLGFISY FFAPETYATI LLRKKANKLR KETGNQDLYS VLDTVGVTAK QRFRGAIIRP 300
  301 MKLLLTHPPV FILSLYVAVV YGVLYLMFST FTFVFAKQYG FGTGTVGLAY LPTGIDVVVK 360
  361 KKIAQNGKTL PEDRLPIWMT VPTGLLIVAS LFWYGWSTQE HTHWIVPMIG VSLFCFGLMG 420
  421 IMMCLQTYLV DAYISYAASV VAAQTVFRCL AGALLPLAGL SMYDEIGLGW GNSILAFLAL 480
  481 VLVPVPAIFH LYGPKIRSKV PKNLE