YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42549437, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	134	0.59
Transmembrane Helix	135	149	0.26
Non-Cytoplasmic	150	200	0.66
Transmembrane Helix	201	223	0.63
Cytoplasmic	224	235	0.71
Transmembrane Helix	236	256	0.79
Non-Cytoplasmic	257	265	0.75
Transmembrane Helix	266	288	0.89
Cytoplasmic	289	546	0.82
Transmembrane Helix	547	565	0.87
Non-Cytoplasmic	566	582	0.83
Transmembrane Helix	583	604	0.82
Cytoplasmic	605	628	0.83
Transmembrane Helix	629	649	0.91
Non-Cytoplasmic	650	659	0.79
Transmembrane Helix	660	681	0.89
Cytoplasmic	682	695	0.86
Transmembrane Helix	696	719	0.85
Non-Cytoplasmic	720	723	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTACVAHHRG PTTPASEREA SGNVPDSTMT KVGATPKCNR GVWSAWLCKK LFLGESNRSL  60
   61 LLPHSGRWHI AEAASGEDRW FSKELKARIE VTQQLKVINR ELGIWLFCAP DLNTSRTKAL 120
  121 SVASPRTRAQ RYKHFIILRF APILDFHLTT NNNSKQFNYL MASWQSFSVP SFRLTQLAQD 180
  181 AYELPLQTFA NTHDTHPSIG HLCLLVFEAV LEVVCVSLPG YIVARLGHFD AEKQKFLANL 240
  241 NVMLFTPCLI FTKLASQLTA EKLSDLAIIP VIFVIQTFVS WVVSVAVGKL FGFNRRASNF 300
  301 VTAMGVFGNS NSLPISLVLS LSQTLKGLHW DKVPGDNDDE VGARGILYLL IFQQLGQLVR 360
  361 WSWGYHVLLA PKEKYPEYRE EIAEEGQRYH DDEDSETAAL IDGLDGETED EGDRLSIDSQ 420
  421 NYDPAGRTPI ASASRVSLAV SSDDDLPKKS MPKGKQGQTD IAAPLNGNAG SMDSFPPVPS 480
  481 LEDDEEPVGI AGRTKSAVKS PFIRLHKATS KTLCNWYQKS PAPVKSTLRF TKRAAGKFNN 540
  541 FIWEFMNPPL WAMLIAILVA SIPSLQRLFF EEGSFVQNSV TNAIRSSGNV AVPLILVVLG 600
  601 ANLARNTMAK DEALDPEEER IGNKLLVASL LCRMVLPTAI MAPMLALIAK YVNVSILDDP 660
  661 IFVIVCFLLT GAPSALQLAQ ICQINNVFEK TMGRILFQSY VIWILPSTLI LVMMALEVVE 720
  721 WAR