YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46117484, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSSRGFIA QATILGSLLA QSVEAQYYKI GTKDEIKQSA RTLAYDLMLQ YDGNTTGMIP  60
   61 GILPGPPTEY KGDYYWWEGG AMMGTYIDYW KLTGDSSYNK VVMEGMLHQT GEGRDYMPSN 120
  121 HSASLGNDDQ GFWGMSAMLA AENKFPNPPE DQAQWLALAQ AVWTTQANPE RHDDECNGGM 180
  181 RWQIPFTNSG YDYKNTIANG CFFNLGARLA RYTGNETYAK HAEETWEWLW GVNYIDHDRW 240
  241 LVYDGGHVGK NCTDINKATF SYNAAILIQG AAFMYNFTNG STVWEDRITK LLDATLKNFF 300
  301 PKNIMWEVPC EGRKGACSTD MLSFKGYVHR WLAVTTQVAP FTAKKILPVL KTSTEAAVKQ 360
  361 CTGGDSGRAC GFYWSGGEFV DVAVDGTSGA GEQMNVLAAV SSLLIEDAEP PATNKTGGIS 420
  421 KGDPNAGKDS HDNPEPTPIT TADRAGAGIL TFLVLAGGLG TFVWMCAFD

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	444	0.99
Transmembrane Helix	445	468	0.86
Cytoplasmic	469	469	0.93