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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42549317, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGRKRPATR SSTRRGAAAA AAVPTGGEIY QDMLAEAGVN PRIPSSPERP LKRRRATPKK  60
   61 PVAQAVKDPE PVPEDPEPSK APQAAEEDDD EDEDEDIEFQ DVILPQPTMQ TMELESEDES 120
  121 DEEEIMFEDV DFTAPLQDLG SKPEAPQALE LNLTAQQSST AQAKKTVERR KPITKEERKI 180
  181 RIDVHKAHIL CLLAQAARRN HWCNDGRVQD YLRPHLTDKT VTYLTPGSHL PQFGRTESLK 240
  241 TGLKKAEEVW KTKYEVTERG LRRSLWAEDP EQLNDYEPPE DMESCLDRDD FREAAKKLQG 300
  301 SRDVGAQLYC ALLRGVGVQA RLVCSLQPLA CTNSAPTMPK QKQKPKKGLT KAEKDEQLKA 360
  361 TMAKYQEMAT AGYGTPSSGS SARRRLGHPN ATAYNFTPTI SPPKPQPTFE TRKRIKESAY 420
  421 PVYWVEILDV GHQKWQPVDA VVTHTFWKPK AMEPPITDKE NFLSYVVAFE ADGTARDVTR 480
  481 RYAKAYTAKT RRARIETVAE DGDAWWRRVM KLYSRRRRTD LDQIEDNELV GIEAREPMPR 540
  541 NVQDFKDHPV FALERHLRRN EVLVPGATPS GTVAAGSRGP LEKIYRRRDV RIARTADKWY 600
  601 RMGREVKALE IPVKWLPKKA KPKNPLDDDH EEDTQGDAGT PIYTEDQTEL YEPPPVRNGI 660
  661 VPKNKFGNID VYVSSMVPAG GAHIIHERAG RAAFLAGVDY APALTGFSFK GRHGTAVLTG 720
  721 VVVAKEHEEG VRTIIESLGD LEQEVEDERR RHRALKAWRK FMMALRIREQ IWSGVDADER 780
  781 MAADDKAAKE AQLDQEIEDV PSDVTEEFDM ADDDDMGGGF LVE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle