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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46127955, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGMPSPPAG LSSLPPELGD YIASFLTNRD IKSLRLTSSS VCRIVTLRLE RVFIGANPRN  60
   61 IQVAYEVANH ETFRKRVKEI IWDETYFNRE SVAMRDYSKN DWYTHLCRDE IGRLAMSKGR 120
  121 PGDAARMCQL AAAMGSVESI EVYKELLRGQ SSVLESGADV KAFEYALDRF TSLRRVTIST 180
  181 KTHGRLFMPI YQTPMIRSFP YGFVYPFPRP VIQGSYFFRN NETIERRGVY STLRALAKHG 240
  241 KHNVSEFIID DEMRYRLGRS DGTDDKTALA DLRSLVQRPG FHRLHLHNKH PIQMYKVLEK 300
  301 AENLQSLCFQ VEDYDPSHRW NPSAAQALQN LAIKGVRVDA DSLAAALAPL ASLRSLELRS 360
  361 VFFYHRIRDG SLVGVGCSQN ARDFLYALRD KTDWRSRPLR PKVTILFSEM LRSPVQILKI 420
  421 DSQVNEFLYE DGENPFSPTE YCRDIMSHEM SYIIWMRSGK GFWIDELDPE YERPNYDENI 480
  481 LERLHHGDLG ETVAGQKRWK ATTTIRGKPA ELNDAAIKSW LAKSLKKPGI LLSNGSFSLF 540
  541 QDTPWLSHLA PSPMSSRDDA SHGASPPSYE PQSSNTGAPP TFASFSPVTL SANTPSRSSR 600
  601 RSTILVHQKS PLLLATPPQI TRALAYSHPF LLPLNTLAGL LTWSTGDPWQ SFLLLSFFWA 660
  661 VVLYGDVVIT WAGPVLVGVA LIAGMYGRRY SPLSSSGWTE SRSQNAGTKG ANQNTGESSQ 720
  721 QNGKANAGEK QSKHVRGNSE VTNTKHQKTL DEIVETLKQL TGRCNVLMEP LLDMTDFLST 780
  781 QTTAISATTR PALTVIFMRL LIITPIWITL TVPPWRVITT RRVILVAGTI ILTWHARVLR 840
  841 VSRAILWRSS TVRRLAAGIT GLHFDTPEQP FRKDLAKASK KGTDRVAQRG DSELTKALGK 900
  901 ATSFQTNRRN ATGKTAGVKF TFIIYENQRR WIGLGWTNNL FAYERAAWTD DHNNSVPTKD 960
  961 DFELPDVSDG SHMEWRWVPG SRWRVDGVSD ESGPIDYDGN EGKNGWIFYD NKWQHGQRGA1020
 1021 DGWGRWTRRR KWYRDAELVE VDQKEDSKNG EKDVKESPAV AKLRSQPYAS NEAMVSTRSA1080
 1081 EAQAEDTSND DASSKAADDS LSVHSTSSKS FLRSPFLRKR ATDRPGADNK ERTRRDSRTS1140
 1141 RTSSLYNDDD ADALGAELAL EIQKQGRPGG QWGIGDEARM SLE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle