YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46128237, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLLASTSIA AAAHALPVTL ALSGIFGSIS LTSWICLLLP QLFANYKAKS ADGLSMAFLI  60
   61 VWLLGDVTNL IGAMFTRLAP TAVALAGYFC LADIVLIGQA VYYNALNARR ASRPEEARPV 120
  121 DPSEESPLIN RSRRRSSSFG LPGSQRRHAT HTESSMEPLR KIVTGEDETP DSSPWVHNTL 180
  181 SLLAVYVIGF AGWFVSYKVG AWESGDPGTP DAPEDAQTPI ELAGLVLGYI SAALYLCARI 240
  241 PQIIKNHREK SCEGLALLFF MLSMSGNLTY GISLVAYSQD KKYLLNALPW LLGSLGTIAE 300
  301 DLIIFAQFRI YSNVDRESAV EP

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.87
Transmembrane Helix	15	38	0.87
Cytoplasmic	39	53	0.78
Transmembrane Helix	54	75	0.87
Non-Cytoplasmic	76	83	0.70
Transmembrane Helix	84	103	0.96
Cytoplasmic	104	178	0.96
Transmembrane Helix	179	197	0.91
Non-Cytoplasmic	198	217	0.88
Transmembrane Helix	218	238	0.90
Cytoplasmic	239	254	0.85
Transmembrane Helix	255	277	0.89
Non-Cytoplasmic	278	286	0.84
Transmembrane Helix	287	308	0.81
Cytoplasmic	309	322	0.85