YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42549191, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTLLRTSLR FSRLANAPKR NFTSSFFRRK KQPSADDPEF VSILDGPPQL VRVGKRHGPG  60
   61 LIILAIIPVT AFILGTWQVQ RLGWKSELIA KFEDRLIRDP LPLPPTIDPD AIHDFDYRRV 120
  121 RATGHFRHDQ EMLIGPRMRD GTDGYMVVTP LERENGTTIL VNRGWIDKKH RDKRTRPDGL 180
  181 PTGEVTVEGL LREPWKKNMF TPDNQPEKGM FYFPDVKQMA ELTGAQPVWV EATTEPEFMQ 240
  241 MVDWEARGIP YGRPAEVNLR NNHAQYIFTW YGLCFATSIM LWMVVKKPAN DVARRVARSK 300
  301 GL

Type	Start	End	Confidence
Cytoplasmic	1	57	0.91
Transmembrane Helix	58	79	0.84
Non-Cytoplasmic	80	265	0.97
Transmembrane Helix	266	285	0.89
Cytoplasmic	286	302	0.89