YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46129240, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.95
Transmembrane Helix	95	116	0.90
Non-Cytoplasmic	117	125	0.69
Transmembrane Helix	126	146	0.74
Cytoplasmic	147	161	0.78
Transmembrane Helix	162	181	0.93
Non-Cytoplasmic	182	199	0.75
Transmembrane Helix	200	223	0.79
Cytoplasmic	224	233	0.67
Transmembrane Helix	234	256	0.75
Non-Cytoplasmic	257	280	0.79
Transmembrane Helix	281	299	0.86
Cytoplasmic	300	391	0.63
Transmembrane Helix	392	414	0.90
Non-Cytoplasmic	415	421	0.82
Transmembrane Helix	422	448	0.78
Cytoplasmic	449	456	0.68
Transmembrane Helix	457	474	0.83
Non-Cytoplasmic	475	525	0.88
Transmembrane Helix	526	545	0.95
Cytoplasmic	546	568	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARARRPQN KPARPPLTIK TDETEDANGN GHINGNGKMS SGVEMRRKAA NPGDENVAAN  60
   61 FIKSESFSLD DPVPKTPALN DHGFFELPRQ DQRSFLLLVL LYFLQGIPMG LATGSVPFLL 120
  121 KNHMSYSEIG VFSLASYPYS LKLLWSPFVD AVWSPKIGRR KTWIVPIQFL SGFGMVWLGS 180
  181 HVESMMDTAG KPGGMTAFSF MLWWFFLVLM CATQDIAVDG WALTLLTPGN VSYASTAQTV 240
  241 GLTAGHFMSY TVFLAFNAAD FANKWFRTVP SDEGLLSLGG YLKFWGWSYI IVTIGLGLLK 300
  301 KEDKSQNEDG VWDVYRIMWG ILKLKNVQTI IIVHLIAKIG FQANDGVTNL KLLDKGFGKD 360
  361 NMALTVLIDF PFEIGLGYYA GMWSQKYTPM RLWCWGFVGR LVAALSAQFV VAIFPSEGVT 420
  421 SWYLLVVIAE HLFSTFTNTI MFVAVSAFHA RVSDPVIGGT YMTLLATYFV LQLVDSFTVA 480
  481 TCHPGKSGAS TLKGTLVTEA FSCAVQSEKE RCEAGGGTCE MTHDGYYTVN ILCVLFGAAT 540
  541 FFWYIKPKVM HLQSLPLRAW RLTNENKR