YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42549000, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRRTYEGPM DWEYQDHGPF DPTSPFTHAA KSNSQNVFAS PSKPSLKPNP FANLGTPSKQ  60
   61 QPPRSSFFTP QVPRAAAPPF RNPAFTTPRR PFEDLALSEA SGAEDSPAPT EVSDFPNDTP 120
  121 EVDHTSDINM GGMASPSKID KSHRYNKTPF SSKKHTPGRG EIRANRDLSV SEFIRKRKRH 180
  181 NLDRDVSIVN RHRWTESDSD YDSGDSIAPR RRSRGRRKAK EEPKGFLGSL FHMLDEHPNA 240
  241 PDNLYRWVKL LVNFFLVSVF VYIGWSIVST VKTDIENANE MARIEIMGRI TECQTQYTIN 300
  301 GCSRNDRPPV IAKHCDEWFE CMTQNPEAIM RVKVTAKQIA EIINEFSDAM NLKAWGFFFA 360
  361 VLIFCAFANN FFLGGYINKP AAPVPSQPAA PSREASMVPE NGPGFMWVPV QTPRMKRHMI 420
  421 LDEGTDTDST PPKMKALLPP AFTPSIRRSP SKGDRGRSPV KNRSPSKGRR EPFA

Type	Start	End	Confidence
Cytoplasmic	1	249	0.71
Transmembrane Helix	250	268	0.73
Non-Cytoplasmic	269	353	0.79
Transmembrane Helix	354	376	0.86
Cytoplasmic	377	474	0.77