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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42548795, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTRGKSPQ PPVKATTPVT EKQQPIAVPQ QQQPTAVTTK SKNKNKNKVT SYQSEGVEDN  60
   61 DVFLLPLSDY WVVLALMALA TVVRVYKIYQ PTSVVFDEVH FGGFATKYIK GKFFMDVHPP 120
  121 LAKMLIALTG WLAGFDGSFD FKEIGKDYIE PGVPYVAMRM FPAICGILLI PCMFFTLKAV 180
  181 GCRTMTATMG AGLIIFENGL LTQARLILLD SPLVAATAFT VLAFSCFTNQ HELGPSKAFQ 240
  241 LSWWFWLVLT GLGLGITVSI KWVGLFTIAW VGSLTLVQLW VLLGDNKNVS MRLFSKHFMA 300
  301 RVFCLIVIPL TFYMAMFAIH FVCLQNPGDG DGFMSSEFQA TLNNKRMKDV PADVMMGSRV 360
  361 SIRHVNTQGG YLHSHPLMYP TGSKQQQITL YPHKDDNNIW LLENQTQPLG IDGQPINGTK 420
  421 AWDALPEPVH IKDGAVLRLY HSPTHRRLHS HDVRAPITEA DWQNEVSAYG YEGFEGDAND 480
  481 LFRVEIVKKK TRGAVAKERL RTIESKFRLV HVMTGCVLFS HKVKLPDWAS EQQEVTCARG 540
  541 GTLPNSLWYI EGNTHPQLQG DVEKVNYRNP GFFGKFWELQ KVMWRTNAGL TDSHAWDSRP 600
  601 ESWPILRRGI NFWGRQHTQV YLLGNPIIWW SSSVAVAIWI VFKAIAVLRW QRSCNDYANT 660
  661 TFKRFDYEIG TSVLGWALHY FPFYLMKRQL FLHHYFPALY FAVIALCQLF DYATARVPGV 720
  721 GARETSVINR IATVSFLVLS AAVFTLYSPL AYGSPWTKTD CKRVKLFTTW DFDCNTFYDS 780
  781 YEKYSEIPSI SSSVVPTTSV AKKEEPKKEV PVVQQQEEAV ISGAPPAPDQ SHVEHRVVAK 840
  841 EEKVEYRDQD GNLLDPEEVK ALEGKVEFKT KYETKTRVVD EQGNEVQEPA EGWDQNLGAG 900
  901 VAPPHPDVEG VDSETVKGNV EDAAAPQDAA ASKDGEKEAE EAKAKPASEN QQDATVNDEL 960
  961 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle