YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46130654, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHHQTSSQI MTRDDEKPFN HTHVPIDHAA LIQSRETGDV LPDDTPIQGN VKALPFAKSW  60
   61 VHMFAGGVGG MTAAAITAPL DVLKTRLQSD FYQAQIRAQR EAQVQTLGRL NPARSALYHL 120
  121 NDTLQILSSV YKNEGWRALF KGLGPTTVGV VPARAINFYV YGNGKRLISE HFNNGVEAPW 180
  181 VHLSAGVAAG VTTSTATNPI WMIKTRLQLD KNVAAGGAQM RKYRNSYDCI RQILRDEGIR 240
  241 SLYRGMSASY LGVVESTMQW MLYEQMKVSL ARRHNEIVRS GREKTWWDKT VDWTGKGFAA 300
  301 GSAKLVAAVI AYPHEVARTR LRQAPMNNGL PKYTGLVQCF KLVWVEEGLM GLYGGLTPHL 360
  361 MRTVPSAAIM FAMYEGILRL FHTPA

Type	Start	End	Confidence
Cytoplasmic	1	59	0.73
Transmembrane Helix	60	80	0.73
Non-Cytoplasmic	81	385	0.60