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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46116628, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNFSDHKR PSSAGVHNAP EEHNDVGENT EELVRKKGLD NDVAHDSVRS PSQAKRCDSG  60
   61 AYDVPQDYSD LNETTSVPAL DVLSPRPTCG RSTRQSSIAR RGNTIEEPEP PARGTEEKKP 120
  121 SKLLTQLYTH SYLVLFAIFG TLARLGLTAL THYSGTPVIF NTIWANFTGS LVMGFLAEDR 180
  181 KLFRNEWGTP TYDEVIKRAA EKRSEGEDGS GSSRQMEVDL DAAKRTHLAT KKSIPMYIGL 240
  241 ATGFCGSFTT FSSFIKDVFL ALSNELATPG WPDSPTSRNG GYSFMAMLAV IITTVALSLS 300
  301 GLFVGTHLAV GLECVTPSIP FSLSRRVLDP LAVLLGWGCW LGAILLAIFP PHEAWRGQAI 360
  361 FALVFAPLGC LLRFYLSLHL NGKMATFPMG TFSANVLGTM LLGMAWDLAH VPLGGVVGCQ 420
  421 VLQGIEDGFC GCLTTISTWV TELAGLRRRS SWVYGTTSVV VSLAMMIAIM GGLRWSDGSR 480
  481 ATNSKTLIYK ITSAKTSIKG TIEDTKNMSP SLLCTNTAAA GQGTAIEDVP EIQLNRRQRR 540
  541 RLRSRLRRLC HISPMEADGE FNAVDLFRQM IAPAPPSRLD WVEDWNVLKT PLIPRQGNAD 600
  601 TRSICDCEEE LLGKNCKITV VTMYSNQAGM DARYEPQATD DVLWETNSEK LPTNRKKTFY 660
  661 RPTALRWYFI VGQIVFLLGV MGLIIWALIE MPNSDGTAKI IHKRYRNYNP NFPRDDSNDL 720
  721 PKTPAINEKL LATTVIVSDI STVVTVPGTT GKYTEMITTT EYTTRWGYTT TVKDGSTLTS 780
  781 VDVTVIPTKV ITEIVTTKPA EVTKSVITSV SVGYSYIYPS GSDSAAPGTL TYSEAITITQ 840
  841 AYSLPGVVAT YTSTLEADRT ETIWTTIVED GETKVISHII TEEAPTVYES VGETTASAST 900
  901 YVSYGRITIT SVYTDTNQKP MPRPKPTEKA KPTVIDVVTV DPDRTIKQVE KLDPTTYVTK 960
  961 VEDIETVNVV ISDGIETFVS EFGPVETTVD FVETGVDGLL TTNKVVSTKA ASSAVITRIA1020
 1021 APTTVVSTRS TEKLKTITSD RTDSSTWIST VKGTTRTYEK TTTIAPTATD DASESEETGG1080
 1081 VVKTVVTVFE LDAAKYFLGK FLPPMLAVML SIPARVIDYN AQLFQPFYAM NQDYGARGPE1140
 1141 SMNLHFGGLG SILEPFNILL EGHPVPFITM VIAWLSALLA PIAVEAIGFK MHGQCKINAF1200
 1201 EGCAPALGVS PLSSRILLAL IGLIILLLCA LLFSLRDFHT GLYANPWSVA GIASLAANKD1260
 1261 IRPRQDSERK IEKEMAEKRY GFGFFENHAG NTEYGVVLYD DAGENLQHDQ LSSEPGSVDT1320
 1321 EVVSTGRRNP FALLGLVWRL AFLIFLLGLM VFLLYYHLTL DKSSSFKNFM NSQTFGVRFL1380
 1381 FATFGVVISF SWTAFFITIT MVVPYQVMSH GPQSASNSVL LTRPTNPFSG FWSAVKHRQI1440
 1441 FPGLVAVMAI FSEFMPILLA NIPYSLSQVR ISHDICARIS VGILALMAIT IIISFLIRWP1500
 1501 DMPVDPRSIA GAMYYVSESN MVDHFSGMAA MDGDERKQRI KELGGTYLYG ELTTRSGERR1560
 1561 PAVEWDDHTL GVGPVMQRQR KDNVYVRHES IDTGYYGHQP 

YRC Informatics Platform - Version 3.0
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