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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42548236, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQAGTEDA AAPQSVTNPT SQNELYPMVN WKYDMFLYTV GNIVDMFFRE VVPRGAWRVP  60
   61 QTGPVLFVAA PHANQFVDAI ILQRTLRNEA KRRASLLIAQ KSVHGFIGWG SRQVGSVPVG 120
  121 RAQDAAKPAT GTIYLPDPIN DPTLIRGVGT KFGQGEGEVQ GMLFLPSVKG QSGASVDILE 180
  181 IISPEEIRVK RPFKGKLALS QLTGRDDIDN NGNFTIKEVK GPAPGFQGTK FKMAPHIDQT 240
  241 KVYDAVFSRL CNGGCVGIFP EGGSHDRTEL LPLKAGVAIM ALGTLAQDPD CGLKIVPVGM 300
  301 NYFHAHKFRS RAVVEFGAPF EIPRHLVELY CNKQRREAIG QVLDTVYQAL NSVTVSAPDY 360
  361 DTLMVIQAAR RLYNPTGKKL PLPVVIELNR RLCMGYERYK NDERITSLTA AVKEYNSQLR 420
  421 YLNLKDHQVQ YAKMNMVKVI FLFIYRSIKL LLLFICTLPG LILFAPVFVA TRIISRRKAK 480
  481 TALAGSTVKI RGRDVMATWK ILVAIGLAPT LYHIYSAIVT FKVWQDRLWG RVPEGVPLWV 540
  541 IYFAMWPFMV GITFASLRFG EVGVDIFKSL RPLLLCLTPT SNYNIHRFRI RRAELSAQVT 600
  601 DVINTLGPEM FDDFEKARLV PDLYKVEGGA ATSPMSHRRR DSDQSSTGLE PETPPALSRR 660
  661 STTQSSRALP RNDSFSNIGH VGIFSTRPPS RARSRSRSSS SGGGFGSGGF PLSGFTTLDS 720
  721 SGGFDEATRK IREAMKHRRH KTDQERTDGD EEDDDSEEEG YDEARKKNAT WIDTSNEEWL 780
  781 CSVIGVRRGQ PHNPSSSTTA ATPSWLPRPP AKQRMALSFK NLVSSVLGSG AAKDDKPPSA 840
  841 SELFVKTDPK VDGEECLHDC DNCSARYPRG FKIEEEDVLY GLVAAWSTHV LVGTGKTDWV 900
  901 RDVEEEEGSV MQAFSKAVEP SNGKLKLSAS NMPTPHDTDD YSEPTTLLLL PAFKLLRNVH 960
  961 PLSVPQIITE VINQAPTNTS PLTPTPLPAS LPSPDPAAGI PDVSLANCPH NAVILMCSHR1020
 1021 TRDVRCAQSA PVLRKEFERQ LRPLGLYRDL HDERPGGVGI YYISHVGGHK YSANVMIYRR1080
 1081 PNAFGLDDTT EQQNGTSNGE KNGDSVNDSG EGSVGAAQGI WLARVMPEDC ENLIRYTVLR1140
 1141 GKVVKPERQL RGGFDRGRGV MSW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle