YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46128765, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSFAPGFR RLLFQASIKA SGPSKFFVCN QCLRTAPRSM PSRVLNAVRS RSYADAAVSK  60
   61 PIGSIAEQAS VHASPSVSQA AKKAWPESNP KGVGLWLIGS AVSVFGIVVF GGLTRLTESG 120
  121 LSITEWRPVT GSLPPMSKED WESEFEKYRA SPEFKLLNPH MDLEEFKKIY FMEWFHRVWG 180
  181 RFIGLTFVIP TAYLVARRKV TPKMALNLAG ISALIGFQGI IGWWMVKSGL KDDLFAPGSH 240
  241 PRVSQYRLTT HLATAFVCYS WMLVSGLTVL RTRRWLMNPE AAMKQIGEMS QPGLRTMRRV 300
  301 VFALAALTFT TAMSGGLVAG LDAGLIYNEF PKMGLGIFPP KQELFDKFYS RKEDHSDLWW 360
  361 RNMLENPSTV QMNHRILAVT TFTSILSLFI YARTRRVKAI LPTNIKKGAN GLFHMVSLQV 420
  421 ALGISTLIYM VPISLAAAHQ AGALGVLTMA IVLAHRLHVP KPTLRLLEKR LKAAAAAAK

Type	Start	End	Confidence
Cytoplasmic	1	91	0.99
Transmembrane Helix	92	114	0.93
Non-Cytoplasmic	115	177	0.97
Transmembrane Helix	178	196	0.95
Cytoplasmic	197	204	0.89
Transmembrane Helix	205	226	0.94
Non-Cytoplasmic	227	247	0.96
Transmembrane Helix	248	270	0.90
Cytoplasmic	271	299	0.95
Transmembrane Helix	300	321	0.92
Non-Cytoplasmic	322	371	0.95
Transmembrane Helix	372	392	0.91
Cytoplasmic	393	410	0.92
Transmembrane Helix	411	431	0.94
Non-Cytoplasmic	432	436	0.77
Transmembrane Helix	437	459	0.90
Cytoplasmic	460	479	0.98