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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42548131, gi|...
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFTSLLAA YVLGGFTFIP LVIVSVLAFI FYTSPVLDDA SNEHKYSLIV DKDDDTTVLE  60
   61 AAKRSHKKDN RAHENDLDVA AGFFAVCREY TPMGINAKPI ERSTPVGSAT VAPSSPSVYQ 120
  121 TMYRSIFERK PTPGPMDNNS TTTSQRPKNA GNVFYVVLRH GHLMLFDDEE QVEVRHVISL 180
  181 AYHDISIYSG GDVTPEGELF IKRNAIRLSR KPAGTELAPD SPVSKPFFLF SENCSAKEDF 240
  241 YFALLKNQEQ TYGADGQVPK PLHFDVKNII SLVQKLHSTE ENVHSRWINA LLGRIFLGVN 300
  301 QTKDIEAFIR EKLTKKISRV KKPAFLTNIT INGIDTGDAA PFFSNFKLKD LTVEGECVVE 360
  361 ADVKYSGNAR IEIAATAKID LGSRFKTREV NLVLAAVLKR TEGHMLIKIK PPPSNRIWVT 420
  421 FQSMPKMEMD IEPIVSARQI TYTVILRQIE NRIKEVIAET VVLPFWDDMP FFKTEHKKWR 480
  481 GGVFEGDNAT VPTDDAESIV AAAGDVAAVS HLDGNPEVTE ETRPLEKSHT IPVMEATPPP 540
  541 TGLFGRRLSR TGTNPPASAS STSVDSKGPG ASPVLKPKIS KTSLQPVVDT DIAHADVFKP 600
  601 STSPPDHATN YMAALHSRSQ DASPRPPQAA DTPPVASSAS QRSNRSSRSS SSVNDAANNG 660
  661 VAEDSQKTPV AMGRRNTTSS TSSGSHADER PASSASSLKE SIKSQTGSLG RGFFAKRDHG 720
  721 EIPVYEEEEE PEHSEAFRDS QQDQNPNHRQ TTLAAVSNAA MQAKQWGWNA YQRHKEARRL 780
  781 AEQANQLDLS QPMGRGQPLP PPGTPLPKPT NGMTRIAPPT SVPARKPVPN SAARNSAESL 840
  841 ETHHETHHDH DQDHQGEYRP PLPQRGRRRQ SHAPEPDNVQ NVLVVAAPED SQPATPSGDD 900
  901 PLNHQIWASS DEQTVTDSGT SHPPSMLTNE SSLVQEDNKS DSPKKATPAT SSAAADDDED 960
  961 FSGWMDNETL DMEINSPVRS SAAAQEVK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle