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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42548077, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRETIQSYIV RISPPGSDKA SPPVKGRDKG KAPRKRVGLT QVYPEPGSKR NHQKLKNDII  60
   61 ALHGLDATSP ETWIGWKVDG DPNSGDVNWL EDKHMLPRFM PDSRILTYQW NANYDAYASS 120
  121 DRFSGHATSL LQDLHADRFS ECRSNCPIIF IVSCFGGLLL AQALVIASHP TEPGHRQHSS 180
  181 ILRHTIGAAF LGTPFGGSPL DDLANQFGNL IHSDKYKFPV MCVYETRHTD LSAYKRRLGA 240
  241 NFSSMGLDEN YHGIVVDSKS ATISGMEAYG FDVRHNMLHK FNDSNDVNFK KIRHWLVKTA 300
  301 DIAGETLGCK ASNDRPVNDL YDDRSHSGSK SDTRLFDLPG SRVRKNPRKP EAREKLYNKL 360
  361 HFKTLGERYK NIWPAHRATC KWLLKNKEYQ AWLDKGKLED HHGVLWLKGN PGTGKSTLMK 420
  421 FAVSKLSMEN PKDIHIFFFF NARGDALEQS TVGMYQSLLH QLFSQIPRLK YVFDDFAQFD 480
  481 LPETDIYESW ALQTLESLLM HAISELGSHK LWVFVDALDE GNEKEVRKMI TFFGGLGKEA 540
  541 KDANVDMRVL FASRHYPQIT ISHKVEIILE SEKEHYLDIK RYVQSELYIK DGMTAQGIQD 600
  601 EVINRASGFF LWVVLVVEIL NETAAKGMNQ KEKLKELPDH LSTLFEGILT RDRENMKGTL 660
  661 LCIQWVLFSR KPLTREELYY AILHGANEKE TRSWAADYVT IEIMDAFILT CSKGLVQFSG 720
  721 ETAQFIHETV RDFLIHDNGM QLIASDATKS IKGAAHDTLK SCCLNCISST LKIIWGSGRP 780
  781 VRFDNLDRLR GIYDSIVESG RKNYSKSKPL YKTPFLHYAL FHLLHHANAA EAGGVSQVSF 840
  841 IQAFQLRSWV YLRKVFLELG TFNSLRSTFL YTLAEEGLGS LIMAMLHADP GKTPHLLVEE 900
  901 LLRHEDVELN FRDAEKGRTP MWCDAEEGYE AIVKLLLERQ GVDVESKDTE YGQTPLCVAA 960
  961 RFGHREVVRL MLYGSSLAGS LKLFSSPRPI SHPSHSLRCW NRDAEFNMAY QREFEMQAIP1020
 1021 PPSPKTLPST EPSSNTPTPD PDPDSTSPGA LHRLLTSFTR APPPSHSEDE YSLSSYNTSY1080
 1081 ATNGRLFNMS KANYNSANTA LARELKNRHL QMIAFGGSIG TGLFVASGVA LFRGGPASLL1140
 1141 IAFITMGTMQ FFTMQALGEL SVAFPVGVLP LEIIAGAFTT NYWNPDASKS IFIILFFFLI1200
 1201 LGINLLGVKG YGEAEFIFSA VKITAVMGFI LLGIIINIAG EPEGGYIGFS HWQNPGAFNN1260
 1261 GFKGFASVLV TATFSFAGTE MVGLAAAETS NPKKSLPAAV KQVFWRISLF YILSILLIGL1320
 1321 LVPYNEPRLL GAKYGSDAAA SPFVIAIEMS GSDILPDIMN AVILISLISV GNTAVYASSR1380
 1381 TIAALAEQSL APKIFAYIDR AGRPLIAIIC CGTVGLLAFV ANSDIHNEIF NWLLAISGLS1440
 1441 TLFTWASICV CHIRFRKAWR LSGYKLSQLA FKSQVGVWGS WVALAAYTTV LLLQFWVAIS1500
 1501 PIQPTDQAPF TTPERIKNFF LQVLTVPVIL IFYIVHKLWM RTKIVRDKDI DIHTGRRYLQ1560
 1561 EYAAY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle