YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42547995, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	123	0.99
Transmembrane Helix	124	146	0.90
Non-Cytoplasmic	147	169	0.75
Transmembrane Helix	170	188	0.85
Cytoplasmic	189	203	0.73
Transmembrane Helix	204	224	0.89
Non-Cytoplasmic	225	232	0.70
Transmembrane Helix	233	251	0.96
Cytoplasmic	252	260	0.82
Transmembrane Helix	261	283	0.88
Non-Cytoplasmic	284	303	0.92
Transmembrane Helix	304	327	0.89
Cytoplasmic	328	345	0.91
Transmembrane Helix	346	367	0.92
Non-Cytoplasmic	368	399	0.87
Transmembrane Helix	400	424	0.76
Cytoplasmic	425	445	0.91
Transmembrane Helix	446	463	0.97
Non-Cytoplasmic	464	473	0.67
Transmembrane Helix	474	495	0.91
Cytoplasmic	496	518	0.88
Transmembrane Helix	519	540	0.87
Non-Cytoplasmic	541	558	0.90
Transmembrane Helix	559	580	0.86
Cytoplasmic	581	626	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHDIKKTTD IKVEVALARD VEAIEMNDMS ASSSQYKDDG NNNNTTKAWA VSVPSSEEQS  60
   61 REQSDWLDGF RRADRRKMKK GWDKQYQSEE PPQIPGDNRY FDIRAANAKT ATSALARELK 120
  121 GRHLQMIAFG GAIGTGLFVT SGTALHEGGP GSVLISYIAI GALQYCTMQS LAELAVIFPI 180
  181 AGSFSAFSTR FLDPSWGFAM GWNYCLQWLF TLPLEIIAGA FTITYWNEGI TKSVFVVIFL 240
  241 AAIFIINLFG VKAYGEAEFV FSTIKVTAIV AFILLGIVIN IGGEPTGSYI GGRYWVDPGF 300
  301 FNNGFKGFCS VLVTSCFSFT GTELIGLAAA ETANPRKSLP SAIKQVFWRI TLFYIVSLML 360
  361 VSLLVPHNDP RILDASSSNS AASPFVVAIE SMGTTVLPSV MNAVILIAVI SVGNSSVFGS 420
  421 SRTLAALADQ SMAPAIFSYV DKQGRPLVAI IFASCVGLLA FIVDLKAQNV IFNWLLSVSS 480
  481 LATLFTWGSI CLTHIRFRKS WAHASHTLEQ LPFRARSGTA GSWFALCGYT LILLSQVWTA 540
  541 VSPVEMKADA TTGDIVQNVF LRLMAVPIVL VMYVGHKLWY RTSFVKLEDI DIQTGRRYYR 600
  601 VHLMNEEDRE ARGAWPLWKK IYRQVC