YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46107780, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMDMPAAST SMAMDHGDMM GGCKISMLWN WNTVDSCFIA ESWRVTSKGM FAGSCIGVIL  60
   61 LVMSLELLRR SVKEWDRYLL RQHAAKFAES TAAGRPASFN GKEGNTAAVS CDNPVPPFRP 120
  121 NVWQQAIRAL LHMMQFSVAY FVMLLAMYYN GYFIICIFIG AYLGAFIFQW ETLSPSGGTS 180
  181 ASKEATVCCG

Type	Start	End	Confidence
Cytoplasmic	1	19	0.53
Transmembrane Helix	20	34	0.42
Non-Cytoplasmic	35	48	0.63
Transmembrane Helix	49	68	0.89
Cytoplasmic	69	135	0.81
Transmembrane Helix	136	170	0.77
Non-Cytoplasmic	171	190	0.58