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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46107656, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIDKLSIS GVRSFSPSVR EAIQFNTPLT LIVGYNGSGK TTIIECLKYA TTGELPPNSK  60
   61 GGAFIHDPKL CGEKEVLAQV KLQFRSINDR QHVATRSVQL TVKKTTRSQK TLDSSLVVVN 120
  121 NGERTTTSTR QAQMDEMIPE RLGVSPAILD AVIFCHQDES LWPLSEPAAL KKRFDEIFEA 180
  181 MKYTKAIDNL KVLRKKQVEQ LGKLQNDEAH NKVNKDRGDR AEKRMKALQA EIEGSRETCE 240
  241 SISAEMEETQ EKIKTTRETA NSHLAIVQNL DTKREQLEYR EEAVKELKST IDELHDDDGK 300
  301 LESDLAHYED RMQHLQDDAD QNKAQYNELQ KELGQSRKEL STKLSEQGKH QSDKDKYERQ 360
  361 LKIQKEMIQE SAQSYGFSGF DGDLSESQVK SFNDRLQKLL AEKKRELERL QKENSSELDQ 420
  421 ATGVITELEG RKAARIQDRV SAKQRMSAIE KRTAVLQNES SQIDVDEGAK AVLDGQMQDL 480
  481 DSRFKTAQKT YENADWDRQL SDENDKLHSL ESENDRLGRE LVECTRLASE RAQLDYRRKE 540
  541 LNDRKRKLDT LTSTWKPKLD KVLGSDWEPQ TLESKFQALV RGQNKVVAEA QKRRDQTRQK 600
  601 QQKVDFRLRT TKESRDKKAK EAAACQQQVV NALLTVRDNA IVDDYKEEVE AAESQVEELR 660
  661 NDLSLFDALV DYYTKCKRLL DTKRKCLLCD RHFDESQAAG MERLSKRIDK HLDPKGKVDT 720
  721 EKDLKEMVSS LEKLRSVRGS YDTYERLTAE LPSLREECKT AEAEFDALER QVEEQASIVS 780
  781 TEEEKQKDLE DMSKTVANIT QTIRDIAESE TQVDRIMSQQ MSGGATRSPD EIHELQASLS 840
  841 DQMRTLKNRI SKLTTDRQRT KDQLNSLELE KSELRNKISR AAGQLDKKQD LQNQIQALKE 900
  901 EVSHQRDVIQ RADDELETIE PSITEARSAR DEVLRRGRAK EQVIVDARDN VANSVNEMKM 960
  961 MDADIQGYID RGGPSNLASN QRAIATLEKT IASTEKEVTD LTVRTNKLKQ DIDNGDRKKK1020
 1021 NIKDNLNYRK NLRTIDVIRQ EIAELEERNA DEDYERLQAE ARMQENHYNR LLAERGSVMG1080
 1081 TMKTKDEELG RLLQEWEMDY KDAKKKYRES HIRVETTKAA IEDLAQCSSA VDKAVMQFHS1140
 1141 MKMAEINRIA GELWQSTYQG TDIDTILIRS DNESNTGKRN YNYRLCMVKQ DTEMDMRGRC1200
 1201 SAGQKVLASI IIRLALAESF GVNCGLIALD EPTTNLDRDN IKSLAESLHM IIKARQAQSN1260
 1261 FQLIVITHDE DFLRHMRCSD FCDSFFRVRR DERQNSVISR EILVFSKVDP LVLVSIQKVQ1320
 1321 SLFGTRRPPN KDRYCYYVYD FQLGFQIAKG REKGISPFLH QWPTRLTTCT ATMAVSAPTP1380
 1381 EHRTSSDSTL DVERDGINAG SNNPTAAAEA TQDGAATAPA GSSPLPGAPG AEDPEAGRTR1440
 1441 SENILIISAL CLALFLAALD TTIITTAVPT IANEFNSSQG YVWIGSAYLL GNASFVPTWG1500
 1501 KISDIFGRKP VLLAAAVIFW IGSLLCAVSN SMGMLIAARA IQGIGGGGLI VLPNIAISDL1560
 1561 FSIRNRGMYF GILGMVWALA SAVGPILGGV FTSQVTWRWC FYINLPISAV AFVILVFFLK1620
 1621 LHNPRTPMKE GLMALDWPGS ILIIGGTVMW LLGLEFGGVS FPWNSATTIC LLVFGILVIG1680
 1681 LFLLYEWKVA KFPVLPLRLF STRNSIASYG VGFTHAFVFM SGSYWLPLYY QGVLGASSLL1740
 1741 SGVYLLPYVL SLSFISAGVG IYIKKTGQYK LAIVMGFFVT VIGFGLFIDL EPRANWVKII1800
 1801 IFQIVAGIGI GPNFQAPLIA IQTNVEPRDI GSATSCFSFI RQLGTSISVV VGGVIFNNEM1860
 1861 EKQYPKLEEE LGPSLASRLS GANAAGSVEL VGSLTGEDGR VAKTAFWHSL RTMYIVYTCF1920
 1921 AGLSLVISLM IKQVNLSKEH KEHKTGLKSL KRRDDENNEA NEGEGVIPGN EKTADN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle