YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42547772, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWHNVGLHCA LLLISYLMEG ASPVWTWSLE KGHVGRSSCV KTPVMHDFHM VTLHNITLPS  60
   61 VSASPFCASQ RRQHPVHVLP SKEADVTLPS STLSSIRNPH CRLPYDPPTL IVTTSSSPNL 120
  121 NLSPNLTLRR TIDVSAPSLS CRRPTRPSRS RPSGSTAMAS SSFRDSINSL GWSRRDEPVN 180
  181 TSQQSGLLSS IQSLNPFQGG SGYVRLPTTE SAGAPLPAPT RREEEEGWFV LSRWDRLLIF 240
  241 GACNLAAVAC FVICFTLFPV LSLKPRKFVI LWSVGSLMFL ASFAAVMGPM NYVYHLFSTP 300
  301 RLPFTAAYFG SITLTLVFAL KLHSTILTVF SALVQLACLV WYLISYFPMG STGLRFATSF 360
  361 GARQATAWMT G

Type	Start	End	Confidence
Signal Peptide	1	23	0.83
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	237	0.95
Transmembrane Helix	238	260	0.94
Cytoplasmic	261	267	0.88
Transmembrane Helix	268	288	0.94
Non-Cytoplasmic	289	301	0.73
Transmembrane Helix	302	320	0.87
Cytoplasmic	321	325	0.63
Transmembrane Helix	326	350	0.77
Non-Cytoplasmic	351	371	0.81