YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46111199, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLTRSLRL PRPKSLFGIT SLQTGTELIS LALVFNKITG VYGLLAILTG YQLSLLQLST  60
   61 YVYSIAVLVG LAILTPHVRR QSPFECLALA WLYIIDTVVN AAYTAAFGLD WYFSTQLNET 120
  121 IESKKTDLPN FVAEGMQGLR KEAAMHGKVV PQETAASMLL IVGATLIRVY FSFVVMAYAK 180
  181 QVLQKYMQLM ILEGPGVDDQ EGPFAEDLPD GEGRRGRLGR LMVSCGRAYW LDTRESDEWA 240
  241 PSLGGSNKPT GAGTLSGEV

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	35	0.89
Non-Cytoplasmic	36	54	0.75
Transmembrane Helix	55	78	0.84
Cytoplasmic	79	86	0.90
Transmembrane Helix	87	107	0.92
Non-Cytoplasmic	108	154	0.96
Transmembrane Helix	155	178	0.85
Cytoplasmic	179	259	0.95