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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42547283, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTATSSSNS AWPPKKRPSQ RTKLRNGTFI IPSTGERSRQ EFSLRTSTNS ALNNNNDNNP  60
   61 KFHSLDEAES ITDRLQIITQ NIKTAFVLVW LWLHTDEGHG VLKCVLAYVL GSLGTFFPPL 120
  121 TAFLGNRDGK HVSATITVYF HPARTVGSML EASVIAFVAV FYAETISVLS MGIAIAMRSQ 180
  181 FGLTGAAHAL ILIVCIGGGL GFVGWVKQKL NSPLVNVGST LASIAIISVI TKEESVQGGY 240
  241 FDDDKIVQVL KLLLVGITCT FAVNLLLWRV SARQVLRRSI MTANSSLGDK LSSITKGFLS 300
  301 GTEDELWTNE YSRVSARYNA AYATMHSTLR EAKFEYYFLG RESFYPLDKR LSRSVEGLSQ 360
  361 ALGGLRSALE TQFTLLREVP SFEDSFPSPR STVLTPPLAR AISAYLEGGG QRLSDIDESG 420
  421 ESEEERQATR NKSDSALMVA PAFQEPSDIF ALFINMLGPS IKSLAHTLSE ILREPAFGKD 480
  481 PNKDVTVNEQ LRESLRDALN LYNNARSGSL EELYRTIEFG RTRSEKIQAD IEEVAAACGH 540
  541 FSFSLQAVAE ETDAYLDVLE DVKYTTETAS RSWSWLKFWR RFNWTKSPDK NMMGDPERES 600
  601 LIQKPPVPRL RKSQIPKGIP DTMVARRDTF NWDAAPQASK LKRRFAQKML QISRFVVRED 660
  661 ILFGIKVGIG ALLWAMLAFI PGTRPIYQKW RGEWGLLSFM IVAAMTTGSA NTTGTARFKG 720
  721 TIIGATFAVI CWTVSQGNAI VLVCLGGLVA LFNFYVILVI KKAPLGRIAL LAYNVSTLYA 780
  781 YSLSQDVDDD DDDEGGANPL IFDIVWHRVI AVTLERNSEK DFLSCIFRWG LFGSAGPSQY 840
  841 RFRRTARTTP LTICERANKL RSSDMANSAA AFKLASLRTA AKSEFELRGP FPDAAYGRIL 900
  901 RSTKNMLNGF YAMRLIASKR NELTEGERAL LEYTSAERAL LCQRICHVFQ VVASCLMLEY 960
  961 PLTDAIPTVE NNKDRLLGKI YQFRKEHMSA DLLSDETPLA IQESDYALLY AYTLVTLQVA1020
 1021 AELNKVRAEI ESLYGVLHDE ALLLQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle