YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46137573, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSINILTAR VSPPPSPTQS RSNSIGSLVG LASEDDHQHG DHRPSDENET EPFPQDTFDE  60
   61 SRFETEKPGE ETPLLGDTGE NQTRSSWWHS IPRRIASSII GSLRWVLATL ASPGVYLIAC 120
  121 FYDEYGNFAP FSQLGKLFGL GGGNKAMDEP NHVSEKEYGR TTGYRRLSPK PRHTSSSSTS 180
  181 SGLSSESESD AGSRSSSRHA RSKSLQPAEE NGPARRSIRI KLNSDEDLRQ RKHRKTQSAV 240
  241 ARTKASDLGS GDLSAHLKSP TSPIAALTRY PKTPAPPRPL IPRRQPSYIN LEPPSSPQKT 300
  301 LILDLDETLI HSMSKGGRMS TGHMVEVRLN TTYVGVGGQT SIGPQHPILY WVNKRPYCDE 360
  361 FLRRVCKWYN LVVFTASVQE YADPVIDWLE TERKFFSARY YRQHCTFRQG AFIKDLASVE 420
  421 SDLSKVMILD NSPLSYLFHQ DNAIPIQGWI NDPTDTDLMH LVPLLEGLQN AGAES

Type	Start	End	Confidence
Cytoplasmic	1	100	0.51
Transmembrane Helix	101	122	0.47
Non-Cytoplasmic	123	475	0.99