YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42546925, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFTAKEVA AHNTRGDCWT IIKGQVYDVT KYMEDHPGGA DVLIESAGKD STIEFDSAGH  60
   61 SEDAFEIMEE YRIGEYKGAP VRNAPKAVTL KKAAPVAAAG SSIATTALTA TAAISVAAAA 120
  121 LHQAYRLNPE ILASLPKIKP GSGSGSGPGF LEGFIIASAL FTVAGTVGVK KLSKHLHFEE 180
  181 GGFMSYAPHK KMPKVTKLNP LLQRGWLDPV AYHALPLTVK EEIAPNVFRL VFALPTPTTV 240
  241 LGLPTGQHLA IKAEIDGKSV NRSYTPISNN SDLGKLELVI KCYPDGLLTG RYLANLEIGD 300
  301 EVQFRGPKGS MRYQRGLCKR IGMLAGGTGI TPMFQIIRAI CEDDRDLTQI SLVYANRSEQ 360
  361 DILLREQLET FARRYPQNFR LYYLVEKAPE NWAYGTGYAT QELMEEKFPA PGPDSKIMLC 420
  421 GPPGMIKAAK TSLGNLGFEQ PGASSKMTDH IFCF

Type	Start	End	Confidence
Cytoplasmic	1	95	0.96
Transmembrane Helix	96	121	0.80
Non-Cytoplasmic	122	149	0.91
Transmembrane Helix	150	169	0.88
Cytoplasmic	170	320	0.89
Transmembrane Helix	321	337	0.43
Non-Cytoplasmic	338	454	0.54