YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46110397, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.98
Transmembrane Helix	66	87	0.88
Non-Cytoplasmic	88	102	0.71
Transmembrane Helix	103	123	0.87
Cytoplasmic	124	134	0.84
Transmembrane Helix	135	157	0.90
Non-Cytoplasmic	158	165	0.74
Transmembrane Helix	166	188	0.88
Cytoplasmic	189	194	0.85
Transmembrane Helix	195	216	0.92
Non-Cytoplasmic	217	231	0.90
Transmembrane Helix	232	253	0.90
Cytoplasmic	254	260	0.76
Transmembrane Helix	261	279	0.96
Non-Cytoplasmic	280	301	0.90
Transmembrane Helix	302	323	0.90
Cytoplasmic	324	336	0.81
Transmembrane Helix	337	358	0.94
Non-Cytoplasmic	359	364	0.84
Transmembrane Helix	365	386	0.91
Cytoplasmic	387	394	0.81
Transmembrane Helix	395	416	0.85
Non-Cytoplasmic	417	431	0.76
Transmembrane Helix	432	451	0.90
Cytoplasmic	452	661	0.94
Transmembrane Helix	662	686	0.69
Non-Cytoplasmic	687	694	0.68
Transmembrane Helix	695	716	0.81
Cytoplasmic	717	722	0.59
Transmembrane Helix	723	746	0.81
Non-Cytoplasmic	747	751	0.57
Transmembrane Helix	752	773	0.84
Cytoplasmic	774	781	0.67
Transmembrane Helix	782	806	0.87
Non-Cytoplasmic	807	815	0.64
Transmembrane Helix	816	836	0.94
Cytoplasmic	837	892	0.66
Transmembrane Helix	893	907	0.41
Non-Cytoplasmic	908	921	0.54
Transmembrane Helix	922	942	0.77
Cytoplasmic	943	947	0.78
Transmembrane Helix	948	968	0.93
Non-Cytoplasmic	969	977	0.76
Transmembrane Helix	978	999	0.93
Cytoplasmic	1000	1009	0.81
Transmembrane Helix	1010	1032	0.89
Non-Cytoplasmic	1033	1041	0.85
Transmembrane Helix	1042	1064	0.85
Cytoplasmic	1065	1204	0.82
Transmembrane Helix	1205	1224	0.45
Non-Cytoplasmic	1225	1693	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKTLARPD EPGVHARDPR SLHPQDETSK IVGNSASIPS DNNEPPTNSN EFESAEHSSK  60
   61 KSLVQIATVM ASLCACVFLA ALEVTIVSTA LPTIAAHFTS DSGYTWIGTS FVLAHTASTP 120
  121 SWGKISDIWG RKPILLIANV IFFAGSLLCA LVDDLAIFIA GRAIQGLGAA VWAVASGVGP 180
  181 ILGGAFTVRL SWRWCFWINL PITVAVFFLL VLTLRLPSPN TPVWAGLKAI DWPGSFLIVG 240
  241 GTLMLLLGLY LGGVYEPWNS ATVVCLIVFG IITALLFVWN EWKLAEYPVI PVHLFKTWSS 300
  301 SAAYAVTFFH AFVFMGVAYY FPLYFQAVLL ASPLRSGIYL LPFILSISIS AAITGIYIQF 360
  361 SGKYLLVSRA GLALMTLGMG LMMNLGMDLN WAKMITFQLL TGIGVGMNFE GPLLSVQAVV 420
  421 PHEDVAAATT SMGFTRTIAT AISVVIGSVL FQNEMKGKNK ALLGALGPEL ARMFDGASAS 480
  481 ANIDLINTLP AESQLIVRAA FFHSLDKMWI LLIVYCILER WAVAQFLYEG SAPEQRPQRR 540
  541 TSGHCQRFEQ NDENHELRHI PTKARGSDES VTRYFERSTL AQQAITTAMN KSFPSSPLTV 600
  601 RNASTLDSLS DAPITNKTDD SPTIPLLQDH RGNSASSEVS MHQEFIDNEA AIKTLAKIDR 660
  661 TIIPLLFITY MFNFMDKVIL SSAAVFGLRE DTYSWVGSVF YLGYFLWTYP TTILIANLPA 720
  721 GKYLTVNTIF WGLVVVFTAA CQNFGGLLTM RFLLGIAEAT ITPGFMFLTS TWYTRDEMPT 780
  781 RVGIWFSGNS VGGLVASLLA FGVGHIESTT IRPWRWMYMI LGTMTFLWSI PLFFLLPDNI 840
  841 SKAAFLSPEE RKIAAKRVST SGTGKTEGTR WRWDQLRECL VDPKSWFIVG IELFTQIPNG 900
  901 GSQSFANIVV ASFGFTNLQS TLINIPYSLL SAGVIAGSGY LAGRFRTLNC LLIIAVIVPC 960
  961 VIGSAVIYKR SHVPQSLHLF AYFLLSTGSA AMPLTMTLVQ SNYRGVTKKM TITAMLFVTY1020
 1021 CLGNMAGPHF FLKSEDPLYE TAFKAITVCY SLAILCALGL RVYLKRLNAS RTKEEGVVGS1080
 1081 AGSGGFAREC AEEQSSDLAT DSEDVTDWQS TSECEVAVAK CSQSFQHQFV KLADYHSKMS1140
 1141 WRNQGITGSN NIPLGKRRFG DEEEEKFDGG DAAVDRDLKR GRDPEPRSEA DGPRRRKKRN1200
 1201 RWGDASENKA AGLMGLPTAI LSNMTSEQLE AYTLHLRIEE ISQKLRIDDV VPADGDRSPS1260
 1261 PAPQYDNHGR RINTREYRYR KRLEDERHKL IEKAMKTIPN YHPPQDYRRP TKTQEKVYVP1320
 1321 VNDYPEINFI GLLIGPRGNT LKKMEGDSGA KIAIRGKGSV KEGKGRSDAA HASNQEEDLH1380
 1381 CLIMADTEDK VNKAKKLIHN VIETAASIPE GQNELKRNQL RELAALNGTL RDDENQACQN1440
 1441 CGKIGHRKYD CPEKQNYTAS IICRVCGNAG HMARDCPDRQ RGASWRNTDA AARPAGRIGS1500
 1501 GDAVDREYEQ LMQELGGGSS GPPARIEAGP GAQDNGSAKP WERGPTGGPA PWRSRNQDSN1560
 1561 EGGSAAPWAR ERGGRNQDNA AGNGGDSYYG QAYGGASGAA APWQQQAPGT QAGYGAYPGY1620
 1621 GAYGAAPGMA APPGLGAAGG APPPPPGAPP GLGDINAFIQ QYAGAAPPPP PPSGDAPPPP1680
 1681 PSDQPPPPPP PGA