YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42546786, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKSRFTRL DAFTKTVDEA RIRTTSGGVV TIVSLLVVLF LSWGEWADYR RIDIHPELIV  60
   61 DKGRGERMEI HLNITFPKMP CELLSLDVMD VSGEQQHGVM HGVNKVRLQP ESQGGAVIDT 120
  121 KSLSLHDDAA HHLDPSYCGG CYGATPPANA QKAGCCQTCD EVREAYAQAS WAFGRGEGVE 180
  181 QCEREHYGEK LDAQRSEGCR IEGGLRVNKV IGNFHFAPGR SFSSGNMHVH DLKNYWDVPK 240
  241 GFSHDFTHIV HSLRFGPQLP DHIARKVGHK NTLWTNHHQN PLDDTRQETH DPNYNFMYFV 300
  301 KIVPTSYLPL GWDKKGIKIA GLLQEDNAGL GAYGYGEDGS VETHQYSVTS HRRSLAGGND 360
  361 AAEGHAERQH TSGGIPGVFF SYDISPMKVV NREEKAKTFS GFLAGLCAIV GGTLTVAAAV 420
  421 DRGLFEGAAR LKKMRSKDMV DVLD

Type	Start	End	Confidence
Cytoplasmic	1	20	0.65
Transmembrane Helix	21	44	0.63
Non-Cytoplasmic	45	400	0.93
Transmembrane Helix	401	425	0.74
Cytoplasmic	426	444	0.74