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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46105470, gi|...
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDLLTPVST TYLKPRKKTE PLFTEVKTSS PQPEPRRITA ISTADDAVDI LKNQPGYDSL  60
   61 ISVLQFLTST KPSSDNFSLS TPSPKSALIV HLLVSEIAPN YWTLLLEGSF DGVTQSAAAL 120
  121 PRDAELFVAC IQSLTGLNAV ITQIRTLIQE SRMGGREEKR TDLSLNANIL LSVLSAILDG 180
  181 HAAISAIWSA STKGIVNPAL QRVQSQKLGS ILTNGQIVST SAEALEIIGR DRERDETKWI 240
  241 ADGLQYSKWM GNSIVSWVRS SPEADAMTFA SDLFQKSLSL HQSETLIKTV IDGLLLSKEG 300
  301 SVQTFTRVAL SQPRSSKKVI HLLLHHLSRK YLNHLTLDDD SPDDNVSAVA GLLKELALND 360
  361 QFRRDTLIEW CASSSGAGLG DGVGIRRAVI ATLSQDREAI ASVLEKSLAQ FGDELYIRHS 420
  421 AILQQDVHTQ ILLLAAGYMH RISPMKLTLL MRVGTYMTTI SNRIGATQSR AQFLGLVVGE 480
  481 ALSSLIDDSK QRLNFKMEET DTEEAQQLKG LTKISDPVGP TDPILSNIAI EPTIQKRKHT 540
  541 TSSKPAQKKA KQKKPIITEV KPKAIIEEID SSDEDEDEDE DLAPYFKDSD PEDSDDDATL 600
  601 VQRNKIKPPV YVRDLISYFR DSETYDKQLL ALQTAPVLIR RKANYGTEVS FHADELAGLL 660
  661 VGIQDKFEIE NFQDLRVQGM VALVISQPKT MAPWLARTFF EGDYSLYQRT SVLITLGLSA 720
  721 RELAGFATSQ YESAAAFPSK RLPEKMEQLY IGPSGENKAL PSSQLKALPA NALDSISQSL 780
  781 TSEFLAPLAA EAADANTGPD VLKLQTFTAR YKSKTKAKPR VRAIPNTTAA LLATSFFSPL 840
  841 AAHFQVALRS AKPIILNHAL LALYLQTLGI IVHAAGPSTL SLPQLTSELW DLLLGVRVHV 900
  901 LGDLGATKGW LAAMASLLEV NGGDLRRLCE NQGREVMETR QWVSMVFERT RGEDGGEEND 960
  961 VKMLAAGVLI RIGEAIEKYQ ALLMGDMIGF Q

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle