YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42546762, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.97
Transmembrane Helix	74	89	0.87
Non-Cytoplasmic	90	113	0.77
Transmembrane Helix	114	133	0.84
Cytoplasmic	134	140	0.82
Transmembrane Helix	141	160	0.93
Non-Cytoplasmic	161	167	0.74
Transmembrane Helix	168	192	0.83
Cytoplasmic	193	202	0.87
Transmembrane Helix	203	223	0.95
Non-Cytoplasmic	224	233	0.83
Transmembrane Helix	234	254	0.93
Cytoplasmic	255	302	0.94
Transmembrane Helix	303	325	0.84
Non-Cytoplasmic	326	334	0.86
Transmembrane Helix	335	358	0.87
Cytoplasmic	359	367	0.87
Transmembrane Helix	368	390	0.90
Non-Cytoplasmic	391	396	0.84
Transmembrane Helix	397	418	0.91
Cytoplasmic	419	428	0.81
Transmembrane Helix	429	449	0.93
Non-Cytoplasmic	450	458	0.83
Transmembrane Helix	459	482	0.89
Cytoplasmic	483	525	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGDITTKAE LERARAEEME QTEDNIARVD SIRSAHPDKP DEDGIYAQAL AQYPTDDSID  60
   61 PALEKKVRRK LDRLIIPVLG VCYFFYYVDK TTLSYAAIFG LKDDLELKGD EYSWLSSSFY 120
  121 FGWLVWAIPS NLLMQRSPPG YYLAFNIFMW GALLMTQAAA NNFAGLLALR ILSGAFEAIA 180
  181 DPAFMLITSM YFTREEQPSR ISAWYAFNGV GVAGGGLIGY AIGNINGALQ SWRYEFLVVG 240
  241 AFCSAWAIVL VLLLPNSPRT IRGFSHDEKL VMIARMRRNQ TGIEQRTINW GQIKEAYLDY 300
  301 KTWLFTLLGF VSNVPNGGIS NFSTLVIKGL GFDTLHTALL GIPQGALVVI WIGLGALANK 360
  361 YMPPNSRTLV SAIFMIPTIA GALGFLLAPA DAYVGRLICF YLTGSYQASF VICLSLITSN 420
  421 TGGQSKKMIV SGMIWFGACI GNIASPFFYR SEQAPSYPLG IGSLLVANCI EFVLFFVFRY 480
  481 AFKWENKKKE KQREALRAAG HDVTTNATAF TDMTDKENPN FEYVY