YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46136975, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRYSLRQT PRKKELFEGM VETPIRRSRS ARRQTSQPLS DVETDSTVEI LPQPTEVLPQ  60
   61 PTRRRTARFK EELDSDTDSD NMGAVNRAAN GKTNGHANGN GNGYTNGHGN GNGHATNGHA 120
  121 TSNGAAPIQA VIEKTKGVSH DPHVVDGWRP GQDPKVDYSG EVEFGGSFGT AAMMTLFPVL 180
  181 MWYMWIGATY YDGKFPSRTE GQSWSEFGAH LANLVYTGAF PRLQVWAWYW SYLIVEGAFY 240
  241 CLLPGVWGYG KPLPHEGGKQ LPYYCNAYWS LYTTLACLAG LHYSGIWPLY TAVDEFGPLL 300
  301 SVAILSGFLV SIVAYFSALW RGKQHRMTGY PIYDFFMGAE LNPRMFGILD FKMFFEVRMP 360
  361 WYILLILSLG TAARQHEQYG YVSGEVWFLV MAHFLYANAC AKGEELIITT WDMYYEKWGF 420
  421 MLIFWNLAGV PLSYCHCTIY LANHHPDVYR WNRGILAAMF VGYLFWYWVW DSCNSQKNRF 480
  481 RAMEKGKLVL RNTFPQVPWQ TIHNPKTIVS PQGTILVDGW YGLARKIHYT ADVWFAVSWG 540
  541 LITGFESPFP WFYPVFFCCM IAHRAARDIH RCRRKYGDAW LEYERRVPYL FIPYVI

Type	Start	End	Confidence
Cytoplasmic	1	163	0.93
Transmembrane Helix	164	186	0.89
Non-Cytoplasmic	187	227	0.90
Transmembrane Helix	228	249	0.92
Cytoplasmic	250	267	0.83
Transmembrane Helix	268	286	0.93
Non-Cytoplasmic	287	298	0.76
Transmembrane Helix	299	319	0.95
Cytoplasmic	320	353	0.94
Transmembrane Helix	354	373	0.78
Non-Cytoplasmic	374	417	0.53
Transmembrane Helix	418	442	0.85
Cytoplasmic	443	448	0.51
Transmembrane Helix	449	470	0.88
Non-Cytoplasmic	471	548	0.55
Transmembrane Helix	549	566	0.75
Cytoplasmic	567	596	0.85