YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46136973, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSELCPVYS PFFGAMGCTC AIVFTCLGAS YGTAKSGVGI AAMGVLRPDL IVKNIVPVIM  60
   61 AGIIGIYGLV VSVLISDGLK QDLPLFTSFI QFGAGLSVGL AGLAAGFAIG IVGDAGVRGT 120
  121 AQQPRLFVGM ILILIFAEVL GLYGLIVALL MNSKATVDAV C

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.66
Transmembrane Helix	12	34	0.90
Cytoplasmic	35	50	0.70
Transmembrane Helix	51	75	0.85
Non-Cytoplasmic	76	88	0.69
Transmembrane Helix	89	113	0.86
Cytoplasmic	114	125	0.64
Transmembrane Helix	126	149	0.90
Non-Cytoplasmic	150	161	0.71