YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46137721, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	25	0.95
Non-Cytoplasmic	26	32	0.78
Transmembrane Helix	33	54	0.89
Cytoplasmic	55	65	0.91
Transmembrane Helix	66	88	0.84
Non-Cytoplasmic	89	140	0.95
Transmembrane Helix	141	163	0.85
Cytoplasmic	164	172	0.85
Transmembrane Helix	173	193	0.96
Non-Cytoplasmic	194	205	0.78
Transmembrane Helix	206	225	0.95
Cytoplasmic	226	235	0.74
Transmembrane Helix	236	253	0.83
Non-Cytoplasmic	254	294	0.74
Transmembrane Helix	295	320	0.64
Cytoplasmic	321	359	0.77
Transmembrane Helix	360	382	0.84
Non-Cytoplasmic	383	402	0.78
Transmembrane Helix	403	422	0.63
Cytoplasmic	423	432	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWWLFKALFS SIFLLSIVLS IPVAFDVGGR DSGLAYSLAL FLFYFIYSSL ELLTPEKSRS  60
   61 RYFLSGFLRL SQWIIIPTLL IWALGQFAVD AGNTNWVERT VGGLFNSKST SWREWMFGKD 120
  121 GLIETVTLGV WDNVLRYSGP VFQLLEGFCT LLVIQAAGQL TRWLVNRGRS DTWLIVLLVL 180
  181 SSSTMASAVY FLWRVAQFPQ IGNLDATLIG IAMTTAVFLC AFGIGSGRGN PIESSLLFAY 240
  241 VVLCIYQIFT DYLPSGNADQ THNQDNSEPD IPPLPPVIMA SYSTFIHMLG SLPHAVHSSL 300
  301 ALLYAAFQTI TPSVIISLTY RSLVFYCATR IIPSIRESGA QAMMQEPDWE DSETASKFLG 360
  361 FLSWFSPSIL IAVYTSLLLQ HFSTSDGPDG WTLRGGDVEG SNWQWANIGL TMVLYGVELY 420
  421 LGSDEHDHWK VD