YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42546433, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTVTSRAK GNGPAAPEHN DVAEKTTDFF WTYTEEPHRT RRLAIIKAHP EITKLCGPEP  60
   61 LTKWVVLGVV SLQVFLAWML QSTPFFSWKF WAVAYVFGAT ANQNLFLAIH EISHNLAFKS 120
  121 PRLNRLIAIF ANLPIGIPYS ASFRPYHLTH HKSLGVDGLD TDLPTAFEAV FLDSILGKSF 180
  181 FCTFQIFFYA LRPMAIYRIP LTQIHFLNIV VQVTFDLILL KYASVNSLLY LLLSSFLAGS 240
  241 LHPLAGHFIA EHYVYETVTP SARDPENKIP VPETFSYYGP LNWFTYNVGL HNEHHDFPAI 300
  301 PWTRLHAVRD IAHEFYDPLP RHESWCYAIW RFIFDENVGM SCRVKRKQGG RLVGGGAVAD 360
  361 WKQSEIEAI

Type	Start	End	Confidence
Cytoplasmic	1	60	0.98
Transmembrane Helix	61	80	0.91
Non-Cytoplasmic	81	89	0.72
Transmembrane Helix	90	109	0.91
Cytoplasmic	110	122	0.86
Transmembrane Helix	123	143	0.86
Non-Cytoplasmic	144	168	0.88
Transmembrane Helix	169	191	0.77
Cytoplasmic	192	203	0.68
Transmembrane Helix	204	220	0.68
Non-Cytoplasmic	221	227	0.45
Transmembrane Helix	228	249	0.66
Cytoplasmic	250	369	0.60