YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42546369, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.74
Transmembrane Helix	86	108	0.83
Non-Cytoplasmic	109	116	0.39
Transmembrane Helix	117	134	0.86
Cytoplasmic	135	138	0.46
Transmembrane Helix	139	156	0.52
Non-Cytoplasmic	157	166	0.78
Transmembrane Helix	167	188	0.92
Cytoplasmic	189	198	0.67
Transmembrane Helix	199	221	0.86
Non-Cytoplasmic	222	250	0.82
Transmembrane Helix	251	269	0.82
Cytoplasmic	270	281	0.84
Transmembrane Helix	282	304	0.80
Non-Cytoplasmic	305	375	0.62
Transmembrane Helix	376	398	0.78
Cytoplasmic	399	408	0.65
Transmembrane Helix	409	431	0.80
Non-Cytoplasmic	432	432	0.36
Transmembrane Helix	433	454	0.61
Cytoplasmic	455	461	0.41
Transmembrane Helix	462	485	0.63
Non-Cytoplasmic	486	486	0.39
Transmembrane Helix	487	505	0.79
Cytoplasmic	506	812	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGQNTLGHG LAKILGIKLE GQKRDQCAQM GDHSVLSSQN GGSFYETEPT SAEWVKEQIP  60
   61 SKEDLITYGA SLFPFSNWIG HYNLQWFAGD LVAGITIGAV VVPQGMAYAM LANLEPQFGL 120
  121 YSSFIGALIY WIFGTSKDIS IGPVAVLSTV VGNVVHDIQN SGQEIPAHVI ASALSISAGF 180
  181 VVLVIGLLRC GWIVDLISIT SLSAFMTGSA ITICVGQLPA LLGLSGFSTR DSPYKVFKNT 240
  241 IEHLGEANSD AIVGLSALAI LYCFRQGLTI AAERYPKHKR LLFFTNTMRT VFVIIMYTTI 300
  301 SWALNKHRRD NTLFNILGAV PKGFQNIGVP KISPDLISGF SPYLPATVIV LLVEHIAISK 360
  361 SFGRVNNYTI DPSQEMVAIG MANLIGPFLG AFPSTGSFSR TAIQSKAGVR TPAAGIVTGL 420
  421 VVLLATYLLT AVFFYIPNAA LAAVIIHAVG DLVTPPNTVY QFWRVSPIEV FIFFTGVIVS 480
  481 IFAHIEAGLY ATVLFSGAVF LYRILKAHGR FMGKVKVHSV IGDHVIGDHH RKVVGRFGTT 540
  541 ENLDISARNV FLPLDHDDGS NPEVEVGHPY PGIFIYRFSE GFNYPNANSS LDYLTDFIQS 600
  601 NTQRSSPEAF ERPGDRPWNN PGPRKSAKRP VHVDADSTLP TLKAVVMDFS SVNNVDITSI 660
  661 QRLIDIRNQL DSYASPDGVD WHFACINNRW TKRALIAAGF GVPCRPEEEG LQRRWKSIFS 720
  721 VAEIGDRDSA LAEETDFHGI TPRDFDITEE EPLVGGMPSV RSYGSMSHRE LEKQRRRGAV 780
  781 VHGQNKPLFH VDLTSALQSA IANVEERPAQ EE