YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42546367, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVTTAITT ACTYKARDSD NIATTSGSDI RPDAGPRKRR HSFFIPRRRS IVGHIMDGEE  60
   61 GLLLKVDLFL SELERRLDFI ENYVDLSKDS SISRTFSTLQ AVRSRCSHAS EEVLGAGRRR 120
  121 LHIMVDTLET RYKETLEAAE SLNEKAHMGV DLLETMLSDF ETRAYKLREQ GFANAANAAE 180
  181 AFMDEGRRVA NEGIERAIQA AYSLEEHIQQ AIVLAKEGRL ISYDDLPSPW RNNPHIHKGY 240
  241 RFTESKLECI RSVFTPSNEL FNIWSHALGL VLVLAIALYF YPNTVNFTLS SKSDVFVAGV 300
  301 FFVMACLTLV CSTIWHTMNA VADVDAISIF ACVDYTGISL LIAASIMTTE YTAFYCDPVS 360
  361 RYIYMGLTAF LGIGGVILPW HPRFNGADMA WVRVAFYVGL ALTGFLPMVQ LGWTHGLDFV 420
  421 YDFYSPISKS MLVYLSGAFV YASKIPERWY PGCFDYIGGS HNLWHAAVLG GILFHYSAMQ 480
  481 AFFANAFHRA EGGCPSY

Type	Start	End	Confidence
Cytoplasmic	1	259	0.77
Transmembrane Helix	260	281	0.91
Non-Cytoplasmic	282	294	0.71
Transmembrane Helix	295	317	0.92
Cytoplasmic	318	325	0.68
Transmembrane Helix	326	348	0.84
Non-Cytoplasmic	349	361	0.66
Transmembrane Helix	362	381	0.95
Cytoplasmic	382	389	0.71
Transmembrane Helix	390	413	0.86
Non-Cytoplasmic	414	462	0.50
Transmembrane Helix	463	484	0.84
Cytoplasmic	485	497	0.51