YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46109242, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHEPVNPM ASPSPQPDMT RNRLPTLFEV LSRRTLPPVD LFSFYIYMRD QQRSVDYLDF  60
   61 WLDVAQHMSL CRHYVRELRR SVLIGTPEAQ SKRSSAILEN IGDLEPRAAG PSMYATEKEK 120
  121 NQDAQMSAFL REDQSHDSPQ SATGPMRPSP QFSNSHDITT ESNSPAHTVA RQDIRASAEK 180
  181 ILYTFLLPGA EREITLPGSI TQEVTAAIEE YGRDDPEVFD VAKDYVFQAM ERDAFPGFLR 240
  241 MKALGNLIPP TLIMRLILGL ISMFAALWAS FVLIFLDYSR TTRCWLILPF TIGVYFLASY 300
  301 QYSLDPIMAL IGYSEYTPFN FSRIREPYVR KLIAKRAMMV MAVTFLVDAA LCVLFILVPG 360
  361 KRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	251	0.54
Transmembrane Helix	252	276	0.86
Cytoplasmic	277	283	0.47
Transmembrane Helix	284	304	0.81
Non-Cytoplasmic	305	336	0.46
Transmembrane Helix	337	358	0.93
Cytoplasmic	359	363	0.40